QIIME 2 plugin for (meta)genome assembly.

q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.

A Qiime plugin for MICOM.

genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.

QIIME 2 plugin for generating kmers from biological sequences