Welcome to the QIIME 2 Library This site is the hub for community distributed software, tutorials, and resources. You can learn how to add your own plugins to this site here.
Recently Updated Plugins collapse q2-kmerizer bokulich-lab QIIME 2 plugin for generating kmers from biological sequencesq2-amrfinderplus bokulich-lab q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.q2-boots caporaso-lab q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾q2-micom micom-dev A Qiime plugin for MICOM.q2-qsip2 caporaso-lab A QIIME 2 plugin for the analysis of qSIP data.q2-rgi bokulich-lab This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.q2-ena-uploader bokulich-lab QIIME 2 plugin for submission of metadata and raw sequence reads to ENA. Discover more Find new plugins and methods.
Base Distributions QIIME 2 Tools for microbiome marker gene analysis from raw sequencing data through publication quality visualizations and statistics. MOSHPIT MOSHPIT (MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking) is a suite of tools for whole metagenome assembly, annotation, and analysis. Pathogenome A suite of plugins to detect viral genomes and protein sequences from MAGs and contigs for antimicrobial-resistance. Tiny A minimal installation of rachis (formerly referred to as the QIIME 2 Framework) for developers that is intended to be extended with custom functionality and plugins.
Documentation collapse Microbiome marker gene analysis with QIIME 2                   MOSHPIT documentation                   Docs for Tiny                   q2-boots Documentation                   genome-sampler documentation                   Read more Find docs and tutorials.
Latest Videos collapse Play Video Building a first QIIME 2 plugin Wed Apr 17 2024 QIIME 2 Play Video Expanding the impact of your microbiome study through metadata standardization Tue Aug 09 2022 QIIME 2 Play Video Provenance replay demo (alpha software release) Mon Jun 13 2022 QIIME 2 Play Video Longitudinal microbiome analysis Tue May 17 2022 QIIME 2 Play Video Beta diversity visualizations Tue May 10 2022 QIIME 2 Play Video Alpha diversity visualizations Tue May 03 2022 QIIME 2 Play Video Getting help with bioinformatics software Thu Apr 21 2022 QIIME 2 Watch more Find recorded workshops and videos.