Welcome to the QIIME 2 Library

This site is the hub for community distributed software, tutorials, and resources.
You can learn how to add your own plugins to this site here.

Base Distributions

Amplicon

A suite of plugins that provide broad analytic functionality to support microbiome marker gene analysis from raw sequencing data through publication quality visualizations and statistics.

MOSHPIT

MOSHPIT (MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking) is a toolkit of plugins for whole metagenome assembly, annotation, and analysis.

Pathogenome

A suite of plugins to detect viral genomes and protein sequences from MAGs and contigs for antimicrobial-resistance.

Tiny

A minimal installation of the QIIME 2 Framework for developers that is intended to be extended with custom functionality and plugins.

Books and Tutorials

Using QIIME 2

Your guide to becoming a QIIME 2 Framework power user.

Developing with QIIME 2

Your guide for writing, testing, and distributing QIIME 2 plugins, interfaces, and documentation.

q2-boots Documentation

genome-sampler documentation

q2-fmt book

Microbiome marker gene analysis with QIIME 2

Docs for MOSHPIT

QIIME 2 Cancer Microbiome Intervention Tutorial

This tutorial was originally developed for the 2022 NIH Foundation for Advanced Education in the Sciences Microbiome Bioinformatics with QIIME 2 workshop, taught online January 31 - February 4, 2022.

Moving Pictures tutorial 🎥

Gut-to-soil axis tutorial 💩🌱

Find books and tutorials.

Latest Videos

Building a first QIIME 2 plugin

Wed Apr 17 2024 QIIME 2

Expanding the impact of your microbiome study through metadata standardization

Tue Aug 09 2022 QIIME 2

Provenance replay demo (alpha software release)

Mon Jun 13 2022 QIIME 2

Longitudinal microbiome analysis

Tue May 17 2022 QIIME 2

Beta diversity visualizations

Tue May 10 2022 QIIME 2

Alpha diversity visualizations

Tue May 03 2022 QIIME 2

Getting help with bioinformatics software

Thu Apr 21 2022 QIIME 2

Watch more

Find recorded workshops and videos.

Welcome to the QIIME 2 Library

q2-micom

micom-dev

q2-annotate

bokulich-lab

q2-boots

caporaso-lab

q2-assembly

bokulich-lab

genome-sampler

caporaso-lab

q2-kmerizer

bokulich-lab

q2-fmt

qiime2

Discover more

Amplicon

MOSHPIT

Pathogenome

Tiny

Using QIIME 2

Developing with QIIME 2

q2-boots Documentation

genome-sampler documentation

q2-fmt book

Microbiome marker gene analysis with QIIME 2

Docs for MOSHPIT

QIIME 2 Cancer Microbiome Intervention Tutorial

Moving Pictures tutorial 🎥

Gut-to-soil axis tutorial 💩🌱

Gut-to-soil axis tutorial 💩🌱

Read more

Building a first QIIME 2 plugin

Expanding the impact of your microbiome study through metadata standardization

Provenance replay demo (alpha software release)

Longitudinal microbiome analysis

Beta diversity visualizations

Alpha diversity visualizations

Getting help with bioinformatics software

Watch more