q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

QIIME 2 plugin for (meta)genome assembly.

q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.

q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

QIIME 2 plugin for submission of metadata and raw sequence reads to ENA.

This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.