Videos

Building a first QIIME 2 plugin
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Building a first QIIME 2 plugin

Wed Apr 17 2024 QIIME 2

Expanding the impact of your microbiome study through metadata standardization
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Expanding the impact of your microbiome study through metadata standardization

Tue Aug 09 2022 QIIME 2

Provenance replay demo (alpha software release)
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Provenance replay demo (alpha software release)

Mon Jun 13 2022 QIIME 2

Longitudinal microbiome analysis
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Longitudinal microbiome analysis

Tue May 17 2022 QIIME 2

Beta diversity visualizations
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Beta diversity visualizations

Tue May 10 2022 QIIME 2

Alpha diversity visualizations
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Alpha diversity visualizations

Tue May 03 2022 QIIME 2

Getting help with bioinformatics software
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Getting help with bioinformatics software

Thu Apr 21 2022 QIIME 2

Reproducible Bioinformatics
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Reproducible Bioinformatics

Thu Apr 21 2022 QIIME 2

Identifying an even sampling depth
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Identifying an even sampling depth

Tue Apr 19 2022 QIIME 2

Phylogenetic tree construction
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Phylogenetic tree construction

Tue Apr 12 2022 QIIME 2

Machine learning in bioinformatics (part 2)
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Machine learning in bioinformatics (part 2)

Fri Apr 08 2022 QIIME 2

Machine learning in bioinformatics (part 1)
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Machine learning in bioinformatics (part 1)

Thu Apr 07 2022 QIIME 2

Taxonomic annotation of observed sequences
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Taxonomic annotation of observed sequences

Tue Apr 05 2022 QIIME 2

Filtering feature tables
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Filtering feature tables

Tue Mar 29 2022 QIIME 2

Computing diversity metrics
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Computing diversity metrics

Tue Mar 22 2022 QIIME 2

Introduction to the QIIME 2 Cancer Microbiome Intervention video tutorial
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Introduction to the QIIME 2 Cancer Microbiome Intervention video tutorial

Mon Feb 21 2022 QIIME 2

An introduction to QIIME 2
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An introduction to QIIME 2

Mon Feb 21 2022 QIIME 2

Running QIIME 2 inside Galaxy (alpha release version)
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Running QIIME 2 inside Galaxy (alpha release version)

Wed Jun 09 2021 QIIME 2

QIIME 2 Galaxy introduction
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QIIME 2 Galaxy introduction

Mon Mar 07 2022 QIIME 2

Semantic types and data formats in QIIME 2
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Semantic types and data formats in QIIME 2

Tue Feb 02 2021 QIIME 2

Introduction to the Cancer Microbiome Intervention Tutorial data
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Introduction to the Cancer Microbiome Intervention Tutorial data

Mon Feb 28 2022 QIIME 2

Sample Metadata
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Sample Metadata

Tue Feb 23 2021 QIIME 2

Exploring the tutorial metadata
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Exploring the tutorial metadata

Tue Mar 08 2022 QIIME 2

Importing and demultiplexing
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Importing and demultiplexing

Tue Mar 09 2021 QIIME 2

16S Lab protocols
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16S Lab protocols

Tue Mar 02 2021 QIIME 2

Importing demultiplexed sequence data
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Importing demultiplexed sequence data

Tue Mar 15 2022 QIIME 2

Denoising
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Denoising

Tue Mar 16 2021 QIIME 2

Denoising sequence data with DADA2
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Denoising sequence data with DADA2

Tue Mar 22 2022 QIIME 2

Filtering feature tables
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Filtering feature tables

Tue Mar 29 2022 QIIME 2

Taxonomic assignment
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Taxonomic assignment

Tue Mar 30 2021 QIIME 2

Taxonomic annotation of observed sequences
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Taxonomic annotation of observed sequences

Tue Apr 05 2022 QIIME 2

Phylogenetic reconstruction
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Phylogenetic reconstruction

Tue Mar 23 2021 QIIME 2

Phylogenetic tree construction
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Phylogenetic tree construction

Tue Apr 12 2022 QIIME 2

Rarefaction
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Rarefaction

Tue Apr 06 2021 QIIME 2

Identifying an even sampling depth
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Identifying an even sampling depth

Tue Apr 19 2022 QIIME 2

Computing diversity metrics
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Computing diversity metrics

Tue Mar 22 2022 QIIME 2

Alpha diversity metrics
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Alpha diversity metrics

Tue Apr 20 2021 QIIME 2

Alpha diversity visualizations
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Alpha diversity visualizations

Tue May 03 2022 QIIME 2

Beta diversity metrics
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Beta diversity metrics

Tue Apr 27 2021 QIIME 2

Beta diversity visualizations
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Beta diversity visualizations

Tue May 10 2022 QIIME 2

Longitudinal analyses
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Longitudinal analyses

Tue May 18 2021 QIIME 2

Longitudinal microbiome analysis
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Longitudinal microbiome analysis

Tue May 17 2022 QIIME 2

Sample classification
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Sample classification

Tue May 11 2021 QIIME 2

Biological Information (part 1)
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Biological Information (part 1)

Thu Feb 10 2022 QIIME 2

Biological Information (part 2)
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Biological Information (part 2)

Thu Feb 10 2022 QIIME 2

An Introduction to Microbiome Science (part 1)
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An Introduction to Microbiome Science (part 1)

Mon Feb 14 2022 QIIME 2

An Introduction to Microbiome Science (part 2)
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An Introduction to Microbiome Science (part 2)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 1)
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A quick introduction to Python 3 programming (part 1)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 2)
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A quick introduction to Python 3 programming (part 2)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 3)
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A quick introduction to Python 3 programming (part 3)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 4)
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A quick introduction to Python 3 programming (part 4)

Mon Feb 14 2022 QIIME 2

Pairwise Sequence Alignment (part 1)
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Pairwise Sequence Alignment (part 1)

Mon Feb 14 2022 QIIME 2

Pairwise Sequence Alignment (part 2)
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Pairwise Sequence Alignment (part 2)

Mon Feb 14 2022 QIIME 2

Pairwise Sequence Alignment (part 3)
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Pairwise Sequence Alignment (part 3)

Mon Feb 14 2022 QIIME 2

A quick introduction to working on the Linux command line
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A quick introduction to working on the Linux command line

Mon Feb 14 2022 QIIME 2

Text manipulation with regular expressions (part 1)
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Text manipulation with regular expressions (part 1)

Wed Feb 23 2022 QIIME 2

Text manipulation with regular expressions (part 2)
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Text manipulation with regular expressions (part 2)

Fri Feb 25 2022 QIIME 2

Sequence Homology Searching (part 1)
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Sequence Homology Searching (part 1)

Thu Mar 10 2022 QIIME 2

Sequence Homology Searching (part 2)
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Sequence Homology Searching (part 2)

Thu Mar 10 2022 QIIME 2

Sequence Homology Searching (part 3)
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Sequence Homology Searching (part 3)

Thu Mar 10 2022 QIIME 2

Microbiome Analysis Methods (part 1)
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Microbiome Analysis Methods (part 1)

Mon Mar 21 2022 QIIME 2

Microbiome Analysis Methods (part 2)
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Microbiome Analysis Methods (part 2)

Mon Mar 21 2022 QIIME 2

Microbiome Analysis Methods (part 3)
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Microbiome Analysis Methods (part 3)

Mon Mar 21 2022 QIIME 2

Machine learning in bioinformatics (part 1)
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Machine learning in bioinformatics (part 1)

Thu Apr 07 2022 QIIME 2

Machine learning in bioinformatics (part 2)
Play Video

Machine learning in bioinformatics (part 2)

Fri Apr 08 2022 QIIME 2

Getting help with bioinformatics software
Play Video

Getting help with bioinformatics software

Thu Apr 21 2022 QIIME 2

Reproducible Bioinformatics
Play Video

Reproducible Bioinformatics

Thu Apr 21 2022 QIIME 2

A quick introduction to working on the Linux command line
Play Video

A quick introduction to working on the Linux command line

Mon Feb 14 2022 QIIME 2

Text manipulation with regular expressions (part 1)
Play Video

Text manipulation with regular expressions (part 1)

Wed Feb 23 2022 QIIME 2

Text manipulation with regular expressions (part 2)
Play Video

Text manipulation with regular expressions (part 2)

Fri Feb 25 2022 QIIME 2

A quick introduction to Python 3 programming (part 1)
Play Video

A quick introduction to Python 3 programming (part 1)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 2)
Play Video

A quick introduction to Python 3 programming (part 2)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 3)
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A quick introduction to Python 3 programming (part 3)

Mon Feb 14 2022 QIIME 2

A quick introduction to Python 3 programming (part 4)
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A quick introduction to Python 3 programming (part 4)

Mon Feb 14 2022 QIIME 2

A high-level introduction to QIIME 2
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A high-level introduction to QIIME 2

Tue Jan 26 2021 QIIME 2

Semantic types and data formats in QIIME 2
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Semantic types and data formats in QIIME 2

Tue Feb 02 2021 QIIME 2

Linux File System and Command Line Interface Refresher
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Linux File System and Command Line Interface Refresher

Tue Feb 09 2021 QIIME 2

PD Mice: Study background and information
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PD Mice: Study background and information

Tue Feb 16 2021 QIIME 2

Sample Metadata
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Sample Metadata

Tue Feb 23 2021 QIIME 2

PD Mice: Sample Metadata
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PD Mice: Sample Metadata

Tue Feb 23 2021 QIIME 2

16S Lab protocols
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16S Lab protocols

Tue Mar 02 2021 QIIME 2

Sharing your analysis results with collaborators using QIIME 2 View
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Sharing your analysis results with collaborators using QIIME 2 View

Tue Jan 26 2021 QIIME 2

Importing and demultiplexing
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Importing and demultiplexing

Tue Mar 09 2021 QIIME 2

PD Mice: Importing demultiplexed sequences
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PD Mice: Importing demultiplexed sequences

Tue Mar 09 2021 QIIME 2

Denoising
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Denoising

Tue Mar 16 2021 QIIME 2

PD Mice: Denoising
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PD Mice: Denoising

Tue Mar 16 2021 QIIME 2

PD Mice: Phylogenetic reconstruction
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PD Mice: Phylogenetic reconstruction

Tue Mar 23 2021 QIIME 2

Phylogenetic reconstruction
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Phylogenetic reconstruction

Tue Mar 23 2021 QIIME 2

Taxonomic assignment
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Taxonomic assignment

Tue Mar 30 2021 QIIME 2

PD Mice: Taxonomic classification
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PD Mice: Taxonomic classification

Tue Mar 30 2021 QIIME 2

Rarefaction
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Rarefaction

Tue Apr 06 2021 QIIME 2

PD Mice: Even Sampling Depth
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PD Mice: Even Sampling Depth

Tue Apr 06 2021 QIIME 2

PD Mice: Core metrics phylogenetic tutorial
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PD Mice: Core metrics phylogenetic tutorial

Tue Apr 13 2021 QIIME 2

Alpha diversity metrics
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Alpha diversity metrics

Tue Apr 20 2021 QIIME 2

PD Mice: Alpha diversity visualizations
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PD Mice: Alpha diversity visualizations

Tue Apr 20 2021 QIIME 2

Beta diversity metrics
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Beta diversity metrics

Tue Apr 27 2021 QIIME 2

PD Mice: Beta diversity visualizations
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PD Mice: Beta diversity visualizations

Tue Apr 27 2021 QIIME 2

Differential Abundance Testing
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Differential Abundance Testing

Tue May 04 2021 QIIME 2

PD Mice: ANCOM differential abundance testing
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PD Mice: ANCOM differential abundance testing

Tue May 04 2021 QIIME 2

Sample classification
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Sample classification

Tue May 11 2021 QIIME 2

PD Mice: Sample classification
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PD Mice: Sample classification

Tue May 11 2021 QIIME 2

Longitudinal analyses
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Longitudinal analyses

Tue May 18 2021 QIIME 2

PD Mice: Longitudinal Analyses
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PD Mice: Longitudinal Analyses

Tue May 18 2021 QIIME 2

PD Mice: Synthesis
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PD Mice: Synthesis

Tue May 25 2021 QIIME 2