Welcome to the QIIME 2 Library

This site is the hub for community distributed software, tutorials, and resources.
You can learn how to add your own plugins to this site here.

Recently Updated Plugins

q2-annotate

bokulich-lab

QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.

q2-ena-uploader

bokulich-lab

QIIME 2 plugin for submission of metadata and raw sequence reads to ENA.

q2-assembly

bokulich-lab

QIIME 2 plugin for (meta)genome assembly.

q2-rgi

bokulich-lab

This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.

q2-micom

micom-dev

A Qiime plugin for MICOM.

q2-boots

caporaso-lab

q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

q2-amrfinderplus

bokulich-lab

q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.

Discover more

Find new plugins and methods.

Base Distributions

Documentation

Latest Videos

Building a first QIIME 2 plugin
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Building a first QIIME 2 plugin

Wed Apr 17 2024 QIIME 2

Expanding the impact of your microbiome study through metadata standardization
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Expanding the impact of your microbiome study through metadata standardization

Tue Aug 09 2022 QIIME 2

Provenance replay demo (alpha software release)
Play Video

Provenance replay demo (alpha software release)

Mon Jun 13 2022 QIIME 2

Longitudinal microbiome analysis
Play Video

Longitudinal microbiome analysis

Tue May 17 2022 QIIME 2

Beta diversity visualizations
Play Video

Beta diversity visualizations

Tue May 10 2022 QIIME 2

Alpha diversity visualizations
Play Video

Alpha diversity visualizations

Tue May 03 2022 QIIME 2

Getting help with bioinformatics software
Play Video

Getting help with bioinformatics software

Thu Apr 21 2022 QIIME 2

Watch more

Find recorded workshops and videos.