q2-ena-uploader

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-ena-uploader-tiny-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-ena-uploader/refs/heads/main/environment-files/q2-ena-uploader-qiime2-tiny-2025.10.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-ena-uploader-tiny-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-ena-uploader/refs/heads/main/environment-files/q2-ena-uploader-qiime2-tiny-2025.10.yml
conda activate q2-ena-uploader-tiny-2025.10
conda config --env --set subdir osx-64

Activate your environment (tiny) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-ena-uploader/refs/heads/main/environment-files/q2-ena-uploader-qiime2-tiny-2025.10.yml

The q2-ena-uploader is a QIIME 2 plugin designed for the programmatic submission of metadata and raw sequence reads to the European Nucleotide Archive (ENA).

The documentation and tutorials are available at https://bokulich-lab.github.io/q2-ena-uploader/.

Links

Documentation

Source Code

Stars

Last Commit

36c13dd

Available Distros

2025.10: 2025.10/tiny
2025.7: 2025.7/tiny
2025.4: 2025.4/tiny