q2-amrfinderplus

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-amrfinderplus-pathogenome-2026.4 --file https://raw.githubusercontent.com/bokulich-lab/q2-amrfinderplus/refs/heads/main/environment-files/q2-amrfinderplus-qiime2-pathogenome-2026.4.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-amrfinderplus-pathogenome-2026.4 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-amrfinderplus/refs/heads/main/environment-files/q2-amrfinderplus-qiime2-pathogenome-2026.4.yml
conda activate q2-amrfinderplus-pathogenome-2026.4
conda config --env --set subdir osx-64

Activate your environment (pathogenome) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-amrfinderplus/refs/heads/main/environment-files/q2-amrfinderplus-qiime2-pathogenome-2026.4.yml

2026.4.02026.4.0
Mon Apr 27 2026
2026.1.02026.1.0
Fri Feb 20 2026

Links

Documentation

Source Code

Stars

Last Commit

ceba59e

Available Distros

2026.4: 2026.4/pathogenome
2026.1: 2026.1/pathogenome

2026.4.02026.4.0

2026.1.02026.1.0