q2-annotate

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-annotate-moshpit-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-annotate/refs/heads/main/environment-files/q2-annotate-qiime2-moshpit-2025.10.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-annotate-moshpit-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-annotate/refs/heads/main/environment-files/q2-annotate-qiime2-moshpit-2025.10.yml
conda activate q2-annotate-moshpit-2025.10
conda config --env --set subdir osx-64

2025.10.02025.10.0
Mon Nov 24 2025
What’s Changed¶
- ENH: expose more parameters in the predict-genes-prodigal action by @Copilot in #295
- ENH: add flag remove_empty to filter-derep-mags and filter-mags by @VinzentRisch in #293
- DEP: template out version pins by @lizgehret in #303
- ENH: expand the BUSCO visualization by including unbinned contigs by @adsapountzi in #277
- BUG: Update broken URL to download DIAMOND database for EggNOG by @fethalen in #308
- BUG: fix kraken2 classification failing because of empty fastq files by @VinzentRisch in #288
- MAINT: update pipelines that use the action partition_contigs by @VinzentRisch in #310
New Contributors¶
- @Copilot made their first contribution in #295
- @adsapountzi made their first contribution in #277
- @fethalen made their first contribution in #308
Full Changelog: #2025.7.0.dev1...2025.10.0
What’s Changed¶
ENH: expose more parameters in the predict-genes-prodigal action by @Copilot in #295
ENH: add flag remove_empty to filter-derep-mags and filter-mags by @VinzentRisch in #293
DEP: template out version pins by @lizgehret in #303
ENH: expand the BUSCO visualization by including unbinned contigs by @adsapountzi in #277
BUG: Update broken URL to download DIAMOND database for EggNOG by @fethalen in #308
BUG: fix kraken2 classification failing because of empty fastq files by @VinzentRisch in #288
MAINT: update pipelines that use the action partition_contigs by @VinzentRisch in #310
New Contributors¶
@Copilot made their first contribution in #295
@adsapountzi made their first contribution in #277
@fethalen made their first contribution in #308
Full Changelog: #2025.7.0.dev1...2025.10.0
What’s Changed¶
ENH: expose more parameters in the predict-genes-prodigal action by @Copilot in #295
ENH: add flag remove_empty to filter-derep-mags and filter-mags by @VinzentRisch in #293
DEP: template out version pins by @lizgehret in #303
ENH: expand the BUSCO visualization by including unbinned contigs by @adsapountzi in #277
BUG: Update broken URL to download DIAMOND database for EggNOG by @fethalen in #308
BUG: fix kraken2 classification failing because of empty fastq files by @VinzentRisch in #288
MAINT: update pipelines that use the action partition_contigs by @VinzentRisch in #310
New Contributors¶
@Copilot made their first contribution in #295
@adsapountzi made their first contribution in #277
@fethalen made their first contribution in #308
Full Changelog: #2025.7.0.dev1...2025.10.0
What’s Changed¶
ENH: expose more parameters in the predict-genes-prodigal action by @Copilot in #295
ENH: add flag remove_empty to filter-derep-mags and filter-mags by @VinzentRisch in #293
DEP: template out version pins by @lizgehret in #303
ENH: expand the BUSCO visualization by including unbinned contigs by @adsapountzi in #277
BUG: Update broken URL to download DIAMOND database for EggNOG by @fethalen in #308
BUG: fix kraken2 classification failing because of empty fastq files by @VinzentRisch in #288
MAINT: update pipelines that use the action partition_contigs by @VinzentRisch in #310
New Contributors¶
@Copilot made their first contribution in #295
@adsapountzi made their first contribution in #277
@fethalen made their first contribution in #308
Full Changelog: #2025.7.0.dev1...2025.10.0
2025.7.0.dev1
Fri Jun 27 2025
2023.5.0.dev02023.5.0.dev0
Mon Mar 06 2023
What’s Changed¶
- ENH: add read/MAG classification using Kraken2 by @misialq in #23
- ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.5.0.dev0
What’s Changed¶
ENH: add read/MAG classification using Kraken2 by @misialq in #23
ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.5.0.dev0
What’s Changed¶
ENH: add read/MAG classification using Kraken2 by @misialq in #23
ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.5.0.dev0
What’s Changed¶
ENH: add read/MAG classification using Kraken2 by @misialq in #23
ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.5.0.dev0
2023.2.0.dev02023.2.0.dev0
Mon Feb 13 2023
What’s Changed¶
- ENH: add read/MAG classification using Kraken2 by @misialq in #23
- ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.2.0.dev0
What’s Changed¶
ENH: add read/MAG classification using Kraken2 by @misialq in #23
ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.2.0.dev0
What’s Changed¶
ENH: add read/MAG classification using Kraken2 by @misialq in #23
ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.2.0.dev0
What’s Changed¶
ENH: add read/MAG classification using Kraken2 by @misialq in #23
ENH: add an action to build a Kraken 2 database by @misialq in #24
Full Changelog: #2022.11.0.dev0...2023.2.0.dev0
2022.11.0.dev02022.11.0.dev0
Fri Nov 11 2022
What’s Changed¶
- ENH: enable contig binning using MetaBAT 2 by @misialq in #7
- ENH: add CheckM bin evaluation action by @misialq in #10
- FIX: correctly install pplacer during conda build by @misialq in #11
- ci: clean up coverage tasks by @thermokarst in #12
- MAINT: move CheckM action to a brand new plugin (q2-checkm) by @misialq in #17
New Contributors¶
- @thermokarst made their first contribution in #12
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
What’s Changed¶
ENH: enable contig binning using MetaBAT 2 by @misialq in #7
ENH: add CheckM bin evaluation action by @misialq in #10
FIX: correctly install pplacer during conda build by @misialq in #11
ci: clean up coverage tasks by @thermokarst in #12
MAINT: move CheckM action to a brand new plugin (q2-checkm) by @misialq in #17
New Contributors¶
@thermokarst made their first contribution in #12
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
What’s Changed¶
ENH: enable contig binning using MetaBAT 2 by @misialq in #7
ENH: add CheckM bin evaluation action by @misialq in #10
FIX: correctly install pplacer during conda build by @misialq in #11
ci: clean up coverage tasks by @thermokarst in #12
MAINT: move CheckM action to a brand new plugin (q2-checkm) by @misialq in #17
New Contributors¶
@thermokarst made their first contribution in #12
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
What’s Changed¶
ENH: enable contig binning using MetaBAT 2 by @misialq in #7
ENH: add CheckM bin evaluation action by @misialq in #10
FIX: correctly install pplacer during conda build by @misialq in #11
ci: clean up coverage tasks by @thermokarst in #12
MAINT: move CheckM action to a brand new plugin (q2-checkm) by @misialq in #17
New Contributors¶
@thermokarst made their first contribution in #12
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
2022.8.0.dev02022.8.0.dev0
Tue Aug 30 2022
2022.4.0.dev02022.4.0.dev0
Fri Apr 22 2022

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05b45ea

Available Distros

2025.10: 2025.10/moshpit
2025.4: 2025.4/moshpit
2024.10: 2024.10/metagenome

2025.10.02025.10.0

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

2025.7.0.dev1

2023.5.0.dev02023.5.0.dev0

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What’s Changed¶

What’s Changed¶

What’s Changed¶

2023.2.0.dev02023.2.0.dev0

What’s Changed¶

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What’s Changed¶

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2022.11.0.dev02022.11.0.dev0

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

2022.8.0.dev02022.8.0.dev0

2022.4.0.dev02022.4.0.dev0