q2-minimap2

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-minimap2-amplicon-2026.1 --file https://raw.githubusercontent.com/bokulich-lab/q2-minimap2/refs/heads/main/environment-files/q2-minimap2-qiime2-amplicon-2026.1.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-minimap2-amplicon-2026.1 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-minimap2/refs/heads/main/environment-files/q2-minimap2-qiime2-amplicon-2026.1.yml
conda activate q2-minimap2-amplicon-2026.1
conda config --env --set subdir osx-64

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-minimap2/refs/heads/main/environment-files/q2-minimap2-qiime2-amplicon-2026.1.yml

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abb1eba

Available Distros

2026.1: 2026.1/amplicon; 2026.1/moshpit
2025.10: 2025.10/amplicon; 2025.10/moshpit