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q2-skani

bokulich-lab

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Quickstart install for:
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name q2-skani-moshpit-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-skani-moshpit-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
conda activate q2-skani-moshpit-2025.10
conda config --env --set subdir osx-64

Activate your environment (moshpit) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name q2-skani-moshpit-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-skani-moshpit-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
conda activate q2-skani-moshpit-2025.10
conda config --env --set subdir osx-64

Activate your environment (moshpit) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name q2-skani-moshpit-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-skani-moshpit-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
conda activate q2-skani-moshpit-2025.10
conda config --env --set subdir osx-64

Activate your environment (moshpit) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name q2-skani-moshpit-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-skani-moshpit-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
conda activate q2-skani-moshpit-2025.10
conda config --env --set subdir osx-64

Activate your environment (moshpit) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-skani/refs/heads/main/environment-files/q2-skani-qiime2-moshpit-2025.10.yml
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Available Distros
2025.10
2025.10/moshpit
2025.10/tiny
2025.7
2025.7/moshpit
2025.7/tiny
2025.4
2025.4/moshpit
2025.4/tiny