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q2-micom

micom-dev

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Quickstart install for:
[Fresh Install]
[Update Existing]
conda env create --name q2-micom-amplicon-2025.4 --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon-2025.4) and run:

conda env update --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml
[Fresh Install]
[Update Existing]
conda env create --name q2-micom-amplicon-2025.4 --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon-2025.4) and run:

conda env update --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml
[Fresh Install]
[Update Existing]
conda env create --name q2-micom-amplicon-2025.4 --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon-2025.4) and run:

conda env update --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml
[Fresh Install]
[Update Existing]
conda env create --name q2-micom-amplicon-2025.4 --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon-2025.4) and run:

conda env update --file https://raw.githubusercontent.com/micom-dev/q2-micom/refs/heads/main/environment-files/q2-micom-qiime2-amplicon-2025.4.yml

Showing the last 30 topics from:

  • https://forum.qiime2.org/tag/micom
TopicRepliesViewsActivity
MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
dgencm_sDaniel_Mora_Diegocdiener
4282Tue Mar 25 2025
IndexError: index 0 is out of bounds for axis 0 with size 0
herrynguyen1706jwdebeliuscherman2cdiener
61306Fri Aug 02 2024
Identifying primary metabolite producing taxa
Lauren_Anderson
092Thu Jun 20 2024
Preparing and importing custom diets and taxonomy files for q2-MICOM
Mehrbod_Estakicdienercherman2
3996Tue Jun 11 2024
Plugin error from micom: cannot convert float NaN to integer
Mary1colinvwoodseangibbonscherman2system
5150Wed May 01 2024
medium for elasticities
dgenc
093Thu Apr 11 2024
Converting excel file to a sbml for community models
dgenccdiener
2165Wed Mar 27 2024
Modfying Virtual Metabolic Human diets to be suitible for MICOM
dgenccdienercherman2seangibbons
13436Sun Mar 17 2024
MICOM tradeoff value
Hansol-cloudcdiener
2525Tue Nov 30 2021
Making micom genus metabolites models
Hansol-cloudcolinbrislawncdiener
5751Thu Jun 24 2021
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Available Distros
2025.4
2025.4/amplicon
2025.4/moshpit
2025.4/tiny
2024.10
2024.10/amplicon
2024.10/metagenome
2024.10/tiny