This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt

This QIIME 2 plugin supports methods for compositional data analysis.

version: 2024.10.0
website: https://github.com/qiime2/q2-composition
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org

Actions

NameTypeShort Description
add-pseudocountmethodAdd pseudocount to table.
ancombcmethodAnalysis of Composition of Microbiomes with Bias Correction
ancomvisualizerApply ANCOM to identify features that differ in abundance.
tabulatevisualizer View tabular output from ANCOM-BC.
da-barplotvisualizerDifferential abundance bar plots

Artifact Classes

FeatureData[DifferentialAbundance]

Formats

FrictionlessCSVFileFormat
DataPackageSchemaFileFormat
DataLoafPackageDirFmt