| Dealing with Poor Taxonomic Assignments | | 6 | 28 | Tue Jun 24 2025 |
| Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt | | 26 | 59667 | Mon Jun 23 2025 |
| Classifier code is running without a result | | 3 | 22 | Wed May 21 2025 |
| Classify the phylum of d__Eukaryota;__ | | 7 | 77 | Wed May 21 2025 |
| Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier | | 2 | 32 | Wed Jun 18 2025 |
| Inconsitent taxonomic classification | | 6 | 59 | Fri May 16 2025 |
| Shotgun sequencing of Fungi - UNITE or KRAKEN2 | | 1 | 26 | Wed Jun 11 2025 |
| Greengenes2 2024.09 phylogenetic tree | | 7 | 99 | Fri May 02 2025 |
| How does the sklearn classifier handle ambiguous bases? | | 3 | 60 | Sun Apr 27 2025 |
| SILVA 138.2 classifier | | 2 | 90 | Wed May 28 2025 |
| Almost all Reads are unclassified - custom 18S V4 classifier | | 13 | 151 | Fri Apr 25 2025 |
| [Feature Classifier Error] Not enough value to unpack | | 3 | 25 | Sat Apr 19 2025 |
| SILVA classifier full lenght vs V3V4 | | 5 | 126 | Wed Apr 16 2025 |
| pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!) | | 12 | 7035 | Fri May 09 2025 |
| low proportion of identified ITS - OTU features | | 3 | 57 | Fri Mar 28 2025 |
| Unable to find all taxon as a result of taxanomic analysis | | 3 | 27 | Thu Mar 13 2025 |
| Taxonomy file has only 30 features | | 3 | 36 | Mon Mar 03 2025 |
| Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom) | | 8 | 107 | Fri Feb 28 2025 |
| Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification | | 4 | 132 | Tue Feb 18 2025 |
| SILVA vs PR2 database using qiime2 | | 1 | 88 | Wed Mar 19 2025 |
| Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases | | 7 | 94 | Sun Mar 16 2025 |
| qiime tools export -- The extraction result is incomplete | | 2 | 15 | Wed Feb 12 2025 |
| ASV with missing taxonomic annotation | | 2 | 62 | Tue Mar 11 2025 |
| qiime feature-classifier extract-reads successfully extracts different number of reads each time | | 4 | 81 | Fri Feb 07 2025 |
| Identification of Acanthamoeba in 18S rDNA analysis | | 1 | 19 | Mon Feb 24 2025 |
| classifying sequences- | | 7 | 67 | Mon Jan 20 2025 |
| The feature-classifier step is too time consuming | | 3 | 29 | Sun Jan 19 2025 |
| qiime2 feature-classifier fit-classifier-naive-bayes KILLED | | 2 | 42 | Fri Jan 17 2025 |
| Strange error while making classifier | | 3 | 45 | Thu Jan 16 2025 |
| Unexpected taxonomic assignment results from two classifiers trained on nearly identical sequences | | 16 | 128 | Thu Jan 16 2025 |
