Greengenes2 2024.09 phylogenetic tree | | 7 | 80 | Fri May 02 2025 |
How does the sklearn classifier handle ambiguous bases? | | 3 | 57 | Sun Apr 27 2025 |
SILVA 138.2 classifier | | 2 | 31 | Wed May 28 2025 |
Almost all Reads are unclassified - custom 18S V4 classifier | | 13 | 143 | Fri Apr 25 2025 |
Classifier code is running without a result | | 2 | 17 | Wed May 21 2025 |
Classify the phylum of d__Eukaryota;__ | | 6 | 68 | Wed May 21 2025 |
[Feature Classifier Error] Not enough value to unpack | | 3 | 20 | Sat Apr 19 2025 |
SILVA classifier full lenght vs V3V4 | | 5 | 104 | Wed Apr 16 2025 |
Inconsitent taxonomic classification | | 5 | 51 | Fri May 16 2025 |
pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!) | | 12 | 6887 | Fri May 09 2025 |
low proportion of identified ITS - OTU features | | 3 | 54 | Fri Mar 28 2025 |
Unable to find all taxon as a result of taxanomic analysis | | 3 | 26 | Thu Mar 13 2025 |
Taxonomy file has only 30 features | | 3 | 32 | Mon Mar 03 2025 |
Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom) | | 8 | 103 | Fri Feb 28 2025 |
Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification | | 4 | 128 | Tue Feb 18 2025 |
SILVA vs PR2 database using qiime2 | | 1 | 68 | Wed Mar 19 2025 |
Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases | | 7 | 80 | Sun Mar 16 2025 |
qiime tools export -- The extraction result is incomplete | | 2 | 15 | Wed Feb 12 2025 |
ASV with missing taxonomic annotation | | 2 | 56 | Tue Mar 11 2025 |
qiime feature-classifier extract-reads successfully extracts different number of reads each time | | 4 | 77 | Fri Feb 07 2025 |
Identification of Acanthamoeba in 18S rDNA analysis | | 1 | 17 | Mon Feb 24 2025 |
classifying sequences- | | 7 | 53 | Mon Jan 20 2025 |
The feature-classifier step is too time consuming | | 3 | 27 | Sun Jan 19 2025 |
qiime2 feature-classifier fit-classifier-naive-bayes KILLED | | 2 | 38 | Fri Jan 17 2025 |
Strange error while making classifier | | 3 | 42 | Thu Jan 16 2025 |
Unexpected taxonomic assignment results from two classifiers trained on nearly identical sequences | | 16 | 110 | Thu Jan 16 2025 |
Assistance with Genus-Level Classification and Filtering ASV/OTUs | | 17 | 243 | Sun Jan 05 2025 |
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt | | 24 | 59107 | Sat Feb 08 2025 |
Is there an issue with the 2024.5 silva138-99-nb classifier? | | 5 | 137 | Tue Jan 07 2025 |
How to train a GTDB SSU classifier using RESCRIPt | | 5 | 2051 | Mon Jan 13 2025 |