q2-longitudinal

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶

This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

version: 2024.10.0
website: https://github.com/qiime2/q2-longitudinal
user support:: Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:: Bokulich et al., 2018

Actions¶

Name	Type	Short Description
nmit	method	Nonparametric microbial interdependence test
first-differences	method	Compute first differences or difference from baseline between sequential states
first-distances	method	Compute first distances or distance from baseline between sequential states
pairwise-differences	visualizer	Paired difference testing and boxplots
pairwise-distances	visualizer	Paired pairwise distance testing and boxplots
linear-mixed-effects	visualizer	Linear mixed effects modeling
anova	visualizer	ANOVA test
volatility	visualizer	Generate interactive volatility plot
plot-feature-volatility	visualizer	Plot longitudinal feature volatility and importances
feature-volatility	pipeline	Feature volatility analysis
maturity-index	pipeline	Microbial maturity index prediction.

Artifact Classes¶

Formats¶