| how to phylogenetically analyse 16S genes recovered from metagenome? | | 2 | 44 | Mon Mar 03 2025 |
| Introducing Greengenes2 2022.10 | | 83 | 25646 | Thu Jan 09 2025 |
| Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty. | | 3 | 28 | Mon Jul 15 2024 |
| Phylogeny error | | 5 | 84 | Tue Jun 25 2024 |
| Core-metrics (Plugin error from diversity) | | 11 | 579 | Fri Mar 01 2024 |
| Error occured while running for MAFFT in qiime2 | | 12 | 219 | Thu Feb 22 2024 |
| ASVs of the same genus in different branches on the phylogenetic tree | | 3 | 189 | Mon Feb 19 2024 |
| qiime vsearch cluster-features-open-reference issue | | 20 | 412 | Thu Feb 15 2024 |
| Generating phylogenic tree for diversity analyses | | 5 | 201 | Mon Nov 20 2023 |
| Greengenes2 feature in table not found in tree during beta-rarefaction | | 7 | 517 | Tue Sep 05 2023 |
| plugin error from phylogeny - no such file or directory: mafft | | 5 | 676 | Wed May 10 2023 |
| Visualizing phylogenetic trees | | 2 | 1084 | Mon May 15 2023 |
| UniFrac and Phylogenetic Methods with Full-length 16S-ITS-23S Sequences | | 3 | 974 | Wed Mar 29 2023 |
| q2-phylogeny mafft job "killed" | | 11 | 846 | Tue Feb 21 2023 |
| Phylogenetic tree tools | | 11 | 1546 | Fri Feb 10 2023 |
| plugin error from phylogeny raxml (default): returned non-zero exit status 255 | | 7 | 1047 | Tue Jan 03 2023 |
| Make phylogenetic tree based on sequence | | 5 | 1193 | Mon Dec 05 2022 |
| Qiime 2 version of Qiime1 "pick_rep_set.py" for picking representative OTU sequences | | 4 | 369 | Tue Nov 22 2022 |
| Converting file from .tre to .nwk? | | 5 | 2449 | Sun Aug 28 2022 |
| q2-phylogeny for vertebrates | | 5 | 824 | Thu Aug 25 2022 |
| Phylogenetic analysis of Nanopore 16S reads. How many subsampled reads will do? | | 8 | 1199 | Sat Jul 30 2022 |
| Plugin error from phylogeny qiime2-2022.2 | | 2 | 833 | Thu Jul 28 2022 |
| Plugin error from diversity to get alpha and beta diversity | | 5 | 922 | Thu Jul 21 2022 |
| Bulding a phylogeny using taxonomy | | 6 | 864 | Tue Mar 29 2022 |
| qiime phylogeny | | 2 | 697 | Mon Mar 28 2022 |
| Changing tip labels on rooted-tree.qza from sequence identifiers to SILVA taxa annotations using R | | 10 | 2078 | Wed Mar 23 2022 |
| PD Mouse tutorial error in generating phylogenetic tree | | 12 | 620 | Tue Dec 21 2021 |
| Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny | | 4 | 448 | Thu Jul 22 2021 |
| Querying QIIME's plugins generally, and for making phylogenies specifically | | 2 | 541 | Tue Jun 15 2021 |
| Hierarchy output of gneiis ilr-phylogenetic | | 3 | 429 | Tue Apr 27 2021 |
