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how to phylogenetically analyse 16S genes recovered from metagenome?260Mon Mar 03 2025
Introducing Greengenes2 2022.108327846Thu Jan 09 2025
Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty.328Mon Jul 15 2024
Phylogeny error589Tue Jun 25 2024
Core-metrics (Plugin error from diversity)11624Fri Mar 01 2024
Error occured while running for MAFFT in qiime212221Thu Feb 22 2024
ASVs of the same genus in different branches on the phylogenetic tree3202Mon Feb 19 2024
qiime vsearch cluster-features-open-reference issue20434Thu Feb 15 2024
Generating phylogenic tree for diversity analyses5207Mon Nov 20 2023
Greengenes2 feature in table not found in tree during beta-rarefaction7521Tue Sep 05 2023
plugin error from phylogeny - no such file or directory: mafft5690Wed May 10 2023
Visualizing phylogenetic trees21182Mon May 15 2023
UniFrac and Phylogenetic Methods with Full-length 16S-ITS-23S Sequences31000Wed Mar 29 2023
q2-phylogeny mafft job "killed"11862Tue Feb 21 2023
Phylogenetic tree tools111593Fri Feb 10 2023
plugin error from phylogeny raxml (default): returned non-zero exit status 25571058Tue Jan 03 2023
Make phylogenetic tree based on sequence51233Mon Dec 05 2022
Qiime 2 version of Qiime1 "pick_rep_set.py" for picking representative OTU sequences4380Tue Nov 22 2022
Converting file from .tre to .nwk?52639Sun Aug 28 2022
q2-phylogeny for vertebrates5831Thu Aug 25 2022
Phylogenetic analysis of Nanopore 16S reads. How many subsampled reads will do?81238Sat Jul 30 2022
Plugin error from phylogeny qiime2-2022.22836Thu Jul 28 2022
Plugin error from diversity to get alpha and beta diversity5931Thu Jul 21 2022
Bulding a phylogeny using taxonomy6888Tue Mar 29 2022
qiime phylogeny2728Mon Mar 28 2022
Changing tip labels on rooted-tree.qza from sequence identifiers to SILVA taxa annotations using R102098Wed Mar 23 2022
PD Mouse tutorial error in generating phylogenetic tree12621Tue Dec 21 2021
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny4451Thu Jul 22 2021
Querying QIIME's plugins generally, and for making phylogenies specifically2546Tue Jun 15 2021
Hierarchy output of gneiis ilr-phylogenetic3432Tue Apr 27 2021