| Quality Scores too high for Qiime2 | | 3 | 35 | Tue Sep 23 2025 |
| vsearch unrecognized option '--qseqout' | | 4 | 24 | Tue Jul 01 2025 |
| DeprecationWarning using uchime-stats.qza | | 2 | 36 | Wed Jan 22 2025 |
| denoising and quality filterin | | 3 | 39 | Wed Nov 27 2024 |
| Make OTU cluster from SILVAdatabase | | 3 | 62 | Wed Oct 02 2024 |
| concerns vsearch clustering speed | | 5 | 106 | Mon Aug 05 2024 |
| fungal ITS analysis with QIIME2: current recommended workflow? | | 7 | 1606 | Mon Jul 22 2024 |
| Duplicates causing issues, how to handle merging and clustering? | | 2 | 88 | Wed Jul 10 2024 |
| How to import fasta files which have undergone vsearch based QC | | 2 | 85 | Tue Jun 04 2024 |
| Vsearch dereplication plugin error | | 6 | 181 | Wed Apr 17 2024 |
| qiime vsearch merge-pairs Missing option and Command not found | | 7 | 460 | Thu Mar 28 2024 |
| Low percentage of matching unique query sequences in the process of greengenes2 non-v4-16s action | | 4 | 182 | Tue Feb 27 2024 |
| qiime vsearch cluster-features-open-reference issue | | 20 | 493 | Thu Feb 15 2024 |
| Preparing mixed orientation reads for dada2 | | 6 | 778 | Fri Jan 26 2024 |
| Clustering ASVs into OTUs | | 5 | 244 | Fri Jan 05 2024 |
| Frequency per feature is 1 - each read is being considered as unique feature | | 10 | 351 | Wed Nov 08 2023 |
| Looking for advice on poor merging results with vsearch | | 10 | 484 | Thu Oct 19 2023 |
| Galaxy - couldn't find vsearch join pairs | | 4 | 215 | Sun Aug 06 2023 |
| which ASVs are within an OTU? | | 2 | 211 | Tue Aug 01 2023 |
| Taxonomy consensus column | | 4 | 651 | Wed Apr 19 2023 |
| vsearch dereplicate problem | | 5 | 400 | Mon Apr 17 2023 |
| How to resolve missing OTUs in Qiime2 analysis despite finding through BLAST? | | 5 | 552 | Tue Mar 28 2023 |
| Good classification, poor clustering | | 3 | 262 | Mon Mar 13 2023 |
| Merge feature tables before or after OTU generation from qiime dada2 output? | | 2 | 274 | Thu Mar 30 2023 |
| How cluster ASV with different length in OTU ? | | 8 | 942 | Mon Feb 06 2023 |
| vsearch cluster-features-de-novo is taking too long | | 6 | 679 | Tue Dec 13 2022 |
| Didn't use vsearch but its citation is showing up in my provenance | | 4 | 414 | Tue Oct 18 2022 |
| vsearch classification error | | 19 | 713 | Tue Aug 23 2022 |
| after vsearch join pairs ,,I lost many reads | | 2 | 228 | Fri Aug 05 2022 |
| Guidance modifying q2-vsearch to recover UC file | | 5 | 762 | Tue Aug 16 2022 |
