rachis

Source code repository for the rachis Framework (the framework formerly known as the QIIME 2™ Framework).

Are you looking for:

• the project homepage? That’s https://qiime2.org.
• an explanation of why we now call this framework rachis, and how it is different from QIIME 2? See this announcement. (and don’t worry, the QIIME 2 that you know and love is still alive and well!)
• learning resources for microbiome marker gene (i.e., amplicon) analysis? See the QIIME 2 amplicon distribution documentation.
• learning resources for microbiome metagenome analysis? See the MOSHPIT documentation.
• installation instructions, plugins, books, videos, workshops, or resources? See the QIIME 2 Library.
• general help? See the QIIME 2 Forum
• information about contributing? See the Contributing Guide.
• information about the developers? See the Caporaso Lab website.

Citing rachis¶

If you use rachis, QIIME 2, or any rachis distributions for any published research, please cite Bolyen, Rideout, Dillon, Bokulich, et al. (2019).