Plugins listed on the old library can be found at old-library.qiime2.org.
A Qiime plugin for MICOM.
Last updated: Mon Apr 21 2025
QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.
Last updated: Fri Apr 18 2025
REference Sequence annotation and CuRatIon Pipeline
Last updated: Thu Apr 17 2025
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
Last updated: Wed Apr 16 2025
Last updated: Mon Apr 14 2025
QIIME 2 plugin for (meta)genome assembly.
vsearch plugin for QIIME 2
Last updated: Wed Apr 09 2025
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
Last updated: Mon Apr 07 2025
QIIME 2 plugin for generating kmers from biological sequences
Last updated: Sat Apr 05 2025
Support for multiple sequence alignment in QIIME 2.
Last updated: Thu Apr 03 2025
A QIIME 2 plugin for quality control of sequence and feature data
q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
QIIME 2 plugin supporting taxonomic classification
Last updated: Thu Mar 27 2025
Last updated: Tue Mar 25 2025
q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.
The first choice of wizard lizards for interactive, generalized microbiome data visualization!
Last updated: Mon Mar 24 2025
QIIME 2 plugin for machine learning prediction of sample data.
Quality filtering for QIIME2
Phylogenetic reconstruction, and operations on phylogenetic trees.
This plugin exists to define integration tests between interfaces and the framework.
QIIME 2 plugin for paired sample comparisons
QIIME 2 plugin supporting operations on feature tables.
QIIME 2 plugin wrapping DADA2
QIIME 2 plugin for PICRUSt2
Last updated: Tue Mar 04 2025
QIIME 2 plugin to contextualize taxonomic abundance data into high-quality metabolic reconstruction of the human gut microbiota
Last updated: Mon Feb 03 2025
Qiime2 Sourmash Plugin
Last updated: Mon Dec 23 2024