Plugins listed on the old library can be found at old-library.qiime2.org.
QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.
Last updated: Wed Jun 25 2025
QIIME 2 plugin wrapping DADA2
Last updated: Mon Jun 23 2025
REference Sequence annotation and CuRatIon Pipeline
Last updated: Fri Jun 20 2025
QIIME 2 plugin for submission of metadata and raw sequence reads to ENA.
QIIME 2 plugin for (meta)genome assembly.
Last updated: Wed Jun 18 2025
The first choice of wizard lizards for interactive, generalized microbiome data visualization!
Last updated: Wed Jun 11 2025
QIIME 2 plugin supporting operations on feature tables.
Last updated: Tue Jun 03 2025
This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.
Last updated: Fri May 30 2025
A QIIME 2 plugin for quality control of sequence and feature data
Last updated: Tue May 27 2025
Last updated: Thu May 22 2025
A Qiime plugin for MICOM.
Last updated: Mon May 19 2025
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
Last updated: Thu May 08 2025
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
This plugin exists to define integration tests between interfaces and the framework.
Quality filtering for QIIME2
Qiime2 Sourmash Plugin
vsearch plugin for QIIME 2
QIIME 2 plugin for machine learning prediction of sample data.
QIIME 2 plugin for paired sample comparisons
Support for multiple sequence alignment in QIIME 2.
Phylogenetic reconstruction, and operations on phylogenetic trees.
q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.
QIIME 2 plugin supporting taxonomic classification
genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
Last updated: Mon Apr 07 2025
QIIME 2 plugin for generating kmers from biological sequences
Last updated: Sat Apr 05 2025
q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
Last updated: Thu Apr 03 2025
QIIME 2 plugin for PICRUSt2
Last updated: Tue Mar 04 2025
QIIME 2 plugin to contextualize taxonomic abundance data into high-quality metabolic reconstruction of the human gut microbiota
Last updated: Mon Feb 03 2025