Plugins listed on the old library can be found at old-library.qiime2.org.
Phylogenetic reconstruction, and operations on phylogenetic trees.
Last updated: Thu Aug 21 2025
REference Sequence annotation and CuRatIon Pipeline
Last updated: Wed Aug 20 2025
The first choice of wizard lizards for interactive, generalized microbiome data visualization!
Last updated: Tue Aug 19 2025
Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts usable in downstream analyses
Last updated: Mon Aug 18 2025
QIIME 2 plugin for submission of metadata and raw sequence reads to ENA.
Last updated: Sun Aug 17 2025
QIIME 2 plugin wrapping DADA2
Last updated: Sat Aug 16 2025
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
Last updated: Tue Aug 12 2025
QIIME 2 plugin for generating kmers from biological sequences
Last updated: Tue Aug 05 2025
QIIME 2 plugin supporting operations on feature tables.
QIIME 2 plugin for analysis of genomes using GUNC.
Last updated: Fri Jul 25 2025
Last updated: Wed Jul 23 2025
QIIME 2 plugin for (meta)genome assembly.
Last updated: Fri Jul 18 2025
QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.
Last updated: Wed Jul 16 2025
Last updated: Mon Jul 14 2025
Last updated: Wed Jul 09 2025
Quality filtering for QIIME2
vsearch plugin for QIIME 2
This plugin exists to define integration tests between interfaces and the framework.
QIIME 2 plugin for paired sample comparisons
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
Support for multiple sequence alignment in QIIME 2.
QIIME 2 plugin supporting taxonomic classification
A QIIME 2 plugin for quality control of sequence and feature data
q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.
QIIME 2 plugin for machine learning prediction of sample data.
Qiime2 Sourmash Plugin
q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
Last updated: Tue Jul 01 2025
This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.
Last updated: Fri May 30 2025
A Qiime plugin for MICOM.
Last updated: Mon May 19 2025
genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
Last updated: Mon Apr 07 2025
QIIME 2 plugin for PICRUSt2
Last updated: Tue Mar 04 2025
QIIME 2 plugin to contextualize taxonomic abundance data into high-quality metabolic reconstruction of the human gut microbiota
Last updated: Mon Feb 03 2025