Plugins listed on the old library can be found at old-library.qiime2.org.
A QIIME 2 plugin for the analysis of qSIP data.
Last updated: Thu Mar 05 2026
q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.
Last updated: Mon Mar 02 2026
This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.
Last updated: Thu Feb 26 2026
QIIME 2 plugin for submission of metadata and raw sequence reads to ENA.
QIIME 2 plugin for sequence alignment using minimap2.
Last updated: Fri Feb 20 2026
QIIME2 plugin for quality control analysis of long-read sequences.
QIIME 2 plugin for ANI analysis using skani.
QIIME 2 plugin for analysis of genomes using GUNC.
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
Last updated: Tue Jan 27 2026
QIIME 2 plugin for generating kmers from biological sequences
Constrained sparse regression and classification
Last updated: Thu Jan 15 2026
A Qiime plugin for MICOM.
Last updated: Wed Jan 07 2026
genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
Last updated: Mon Nov 24 2025
Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts usable in downstream analyses
Last updated: Wed Oct 08 2025
QIIME 2 plugin which contains algorithms for solving General Graphical Lasso (GGLasso) problems
Last updated: Mon Sep 22 2025
QIIME 2 plugin for distribution-based clustering
Last updated: Fri Aug 22 2025
QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies
q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
Last updated: Tue Jul 01 2025
QIIME 2 plugin for PICRUSt2
Last updated: Tue Mar 04 2025
QIIME 2 plugin to contextualize taxonomic abundance data into high-quality metabolic reconstruction of the human gut microbiota
Last updated: Mon Feb 03 2025