| Advice in best practice for handling multiple sequencing runs and subset analyses in QIIME 2 (DADA2) | | 2 | 12 | Fri Jan 16 2026 |
| Error was encountered while running DADA2 in R (return code 1) | | 9 | 76 | Mon Dec 01 2025 |
| Denoising low quality reverse reads in paired-end sequencing reads | | 5 | 57 | Wed Dec 03 2025 |
| Issue with UNITE classifier for ITS1 | | 2 | 37 | Tue Dec 02 2025 |
| DADA2 denoising taking long time | | 7 | 51 | Mon Dec 01 2025 |
| Questions about performing quality control with dada2 and generating a feature table | | 3 | 29 | Sat Nov 29 2025 |
| pair ended demultiplexed qza file causing strange error. | | 1 | 25 | Sun Dec 28 2025 |
| High read loss due to artifacts and chimera after denoising 16S V3-V4 paired-end reads | | 1 | 38 | Wed Dec 17 2025 |
| QIIME2 non-chimeric reads | | 4 | 57 | Mon Nov 10 2025 |
| Significant 16S sequence loss while merging w/ DADA2, various truncation settings used | | 3 | 102 | Wed Nov 05 2025 |
| DADA2 Fails on AVITI Data | | 8 | 106 | Wed Oct 29 2025 |
| qiime dada2 denoise-paired is unresponsive | | 3 | 50 | Mon Oct 27 2025 |
| DADA2 priors trimming | | 1 | 19 | Tue Nov 18 2025 |
| priors in qiime2-dada2 | | 4 | 250 | Tue Nov 18 2025 |
| Observed ASV richness drops after adding 3rd MiSeq library — why do I lose ~100 species when I merge libraries? | | 4 | 30 | Thu Oct 16 2025 |
| ITS denoising truncation | | 2 | 41 | Wed Oct 15 2025 |
| Need help choosing truncation lengths for DADA2 and interpreting the demultiplexed sequence count summary. | | 2 | 39 | Mon Oct 13 2025 |
| DADA2 -- denoise | | 2 | 59 | Fri Nov 07 2025 |
| Interpreting KEGG vs MetaCyc pathways in 16S (PICRUSt2) functional prediction | | 1 | 58 | Sun Oct 19 2025 |
| Trained classifier output not found | | 7 | 97 | Thu Sep 11 2025 |
| Converting 16S V3–V4 ASV reads to absolute copy numbers (qPCR / spike-in calibration?) | | 3 | 83 | Thu Oct 09 2025 |
| Chimera removal dilemma in 16S V3–V4: necessary when using Kraken2/Bracken? | | 8 | 110 | Fri Sep 26 2025 |
| 16S CCS without primers: how to skip --p-front/--p-adapter in denoise-ccs? | | 4 | 75 | Tue Aug 26 2025 |
| Effect of primer removal on chimera detection in DADA2 | | 11 | 175 | Mon Aug 25 2025 |
| Why is non-chimera read count often referred to as sequencing depth in 16S rRNA analysis? | | 4 | 120 | Thu Sep 18 2025 |
| Percentage of reads discarded after running DADA2 on NextSeq data | | 1 | 57 | Mon Aug 25 2025 |
| Less percentage of reads merged in qiime-DADA2 even with enough overlapping length present. | | 7 | 92 | Thu Jul 10 2025 |
| dada2 error: rcpp/SparseArray | | 2 | 42 | Wed Jul 09 2025 |
| Shall I need to remove ASV with prevelance in one sample? | | 4 | 78 | Fri Aug 08 2025 |
| Why is there a size difference between my PCR product (~400 bp) and the final representative sequence (313 bp)? | | 4 | 111 | Tue Jul 22 2025 |
