| DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages | | 2 | 18 | Thu May 22 2025 |
| Error with DADA2 with sequences of different runs. | | 4 | 49 | Wed May 21 2025 |
| Please help interpreting demux data | | 1 | 17 | Tue Jun 17 2025 |
| Low percentage of non-quimeric reads after dada2 | | 4 | 41 | Wed May 14 2025 |
| Minimum length of read in ASV (DADA2) | | 5 | 47 | Sun Jun 08 2025 |
| Shotgun sequencing and Trimming | | 2 | 19 | Tue Jun 03 2025 |
| Understanding min sequence length of F and R/ quality scores and how it is impacting dada2 downstream | | 14 | 79 | Tue Jun 03 2025 |
| Denoise pair returning DataFrame' object has no attribute 'map' error | | 5 | 34 | Mon Jun 02 2025 |
| dada2-paired giving return code 1 | | 6 | 34 | Tue May 27 2025 |
| Losing a lot of reads during merging | | 4 | 71 | Fri Apr 18 2025 |
| Can trimming and dada 2 | | 3 | 34 | Mon May 19 2025 |
| QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis | | 14 | 287 | Thu Apr 17 2025 |
| Questions about the running time of qiime dada2 denoise-ccs | | 4 | 49 | Fri Apr 11 2025 |
| trunc length setting in dada2 | | 2 | 12 | Fri Apr 11 2025 |
| dada2 failed while running nextseq data | | 13 | 138 | Thu Apr 10 2025 |
| low proportion of identified ITS - OTU features | | 3 | 56 | Fri Mar 28 2025 |
| dada2 denoise-ccs most reads were filtered out | | 10 | 93 | Tue Mar 25 2025 |
| Alpha diversity with filtered raw data or unfiltered raw data | | 1 | 53 | Thu Apr 24 2025 |
| Am I overthinking this? Dada2 and Greengenes2 | | 6 | 87 | Mon Mar 17 2025 |
| Unable to find all taxon as a result of taxanomic analysis | | 3 | 27 | Thu Mar 13 2025 |
| DADA2 : low non chimeric read counts after denoising step , --p-min-fold-parent-over-abundance | | 12 | 126 | Thu Mar 06 2025 |
| How can I perform learnErrors on a subset of reads? | | 3 | 35 | Mon Apr 07 2025 |
| DADA2 Denoise Single vs Paired Requirements | | 4 | 60 | Thu Mar 06 2025 |
| alpha and beta diversity | | 2 | 33 | Sun Apr 06 2025 |
| DADA2 Filtering Error - Failed to Write Record | | 20 | 57 | Mon Mar 03 2025 |
| Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom) | | 8 | 106 | Fri Feb 28 2025 |
| Why do we get higher species level assignment with an older GTDB classifier than with a more recent one? | | 8 | 101 | Thu Mar 27 2025 |
| Expose more options for DADA2 mergePairs function | | 1 | 50 | Tue Mar 18 2025 |
| How to download seven-number-summaries TSV directly | | 1 | 19 | Fri Mar 07 2025 |
| choosing of sampling depth | | 7 | 79 | Fri Feb 28 2025 |
