| Losing a lot of reads during merging | | 3 | 27 | Fri Apr 18 2025 |
| Am I overthinking this? Dada2 and Greengenes2 | | 6 | 59 | Mon Mar 17 2025 |
| QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis | | 13 | 190 | Thu Apr 17 2025 |
| Unable to find all taxon as a result of taxanomic analysis | | 3 | 25 | Thu Mar 13 2025 |
| Questions about the running time of qiime dada2 denoise-ccs | | 3 | 31 | Fri Apr 11 2025 |
| trunc length setting in dada2 | | 1 | 3 | Fri Apr 11 2025 |
| dada2 failed while running nextseq data | | 12 | 92 | Thu Apr 10 2025 |
| DADA2 : low non chimeric read counts after denoising step , --p-min-fold-parent-over-abundance | | 12 | 80 | Thu Mar 06 2025 |
| How can I perform learnErrors on a subset of reads? | | 3 | 31 | Mon Apr 07 2025 |
| DADA2 Denoise Single vs Paired Requirements | | 4 | 41 | Thu Mar 06 2025 |
| alpha and beta diversity | | 2 | 20 | Sun Apr 06 2025 |
| DADA2 Filtering Error - Failed to Write Record | | 20 | 52 | Mon Mar 03 2025 |
| Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom) | | 8 | 98 | Fri Feb 28 2025 |
| How to Analyzing Multi-Run Sequencing Data in QIIME2 with Minimal Batch Effects | | 7 | 66 | Thu Feb 27 2025 |
| low proportion of identified ITS - OTU features | | 2 | 45 | Fri Mar 28 2025 |
| The question of installing qiime2-amplicon-2024.10 | | 3 | 69 | Mon Feb 24 2025 |
| Why do we get higher species level assignment with an older GTDB classifier than with a more recent one? | | 8 | 78 | Thu Mar 27 2025 |
| dada2 denoise-ccs most reads were filtered out | | 9 | 80 | Tue Mar 25 2025 |
| Plugin error from dada2 in jupyter notebook | | 2 | 27 | Thu Feb 20 2025 |
| I end up with only 3% of my data after denoising with dada2 | | 7 | 75 | Tue Feb 18 2025 |
| Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification | | 4 | 105 | Tue Feb 18 2025 |
| Expose more options for DADA2 mergePairs function | | 1 | 41 | Tue Mar 18 2025 |
| the pooled option to the --p-chimera-method parameter in q2-dada2 | | 2 | 31 | Fri Feb 07 2025 |
| How to download seven-number-summaries TSV directly | | 1 | 12 | Fri Mar 07 2025 |
| Changing one parameter to improve the DADA2 filtering percentage for CCS sequences by 50%? I'm not sure if that's feasible. | | 8 | 62 | Thu Jan 30 2025 |
| choosing of sampling depth | | 7 | 73 | Fri Feb 28 2025 |
| Animals gene family | | 1 | 15 | Wed Feb 26 2025 |
| tutorial for merging different sequencing data in qiime2 | | 6 | 52 | Wed Feb 26 2025 |
| Help!! With 18S Dada2 'Filtering Error in names(answer)' | | 3 | 25 | Fri Jan 24 2025 |
| Help with troubleshooting dada2 denoise-paired error. [NAs produced by integer overflow...is there a fix?] | | 6 | 39 | Tue Jan 21 2025 |
