| Problems after using demux on a artifact | | 5 | 37 | Tue Feb 10 2026 |
| pair ended demultiplexed qza file causing strange error. | | 2 | 43 | Sun Dec 28 2025 |
| Possible bug in qiime cutadapt demux paired (2024.10) | | 5 | 69 | Wed Jan 28 2026 |
| Demux summarize broken after upgrading from 2025.7 to 2025.10 | | 8 | 128 | Wed Dec 17 2025 |
| Duplicate barcode error, but barcodes listed are not the same. | | 7 | 88 | Tue Aug 19 2025 |
| Is there a maximum threshold for demux summarize --p-n ? | | 3 | 64 | Wed Jun 11 2025 |
| DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages | | 2 | 55 | Thu May 22 2025 |
| Invalid value for 'emp-paired-end-sequences.qza' | | 4 | 45 | Thu Mar 06 2025 |
| Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom) | | 8 | 139 | Fri Feb 28 2025 |
| BadZipFile: how to find the corrupted file? | | 5 | 116 | Wed Feb 26 2025 |
| QIIME2 microbiome analysis and python version | | 2 | 82 | Sat Mar 29 2025 |
| Issue importing Paired end sequences with quality and interactive quality plot | | 2 | 28 | Mon Feb 17 2025 |
| Golay Barcodes not being detected with demux | | 5 | 89 | Tue Feb 04 2025 |
| Which position is best for trimming in a paired-end approach? | | 11 | 138 | Fri Jan 24 2025 |
| [demux summarize] Invalid value for '--i-data': [Errno 9] Bad file descriptor | | 9 | 89 | Fri Nov 08 2024 |
| demux for fastq files that don't have barcode in them? | | 4 | 38 | Wed Oct 30 2024 |
| Dada2 unable to run | | 2 | 53 | Tue Oct 29 2024 |
| Interpreting Interactive Quality Plot | | 2 | 118 | Mon Oct 14 2024 |
| Merging after denoising step | | 15 | 314 | Wed Sep 11 2024 |
| QIIME2 Demultiplexing Sequence | | 7 | 184 | Tue Sep 03 2024 |
| Plugin error from demux:Value must be a nonnegative integer or None | | 2 | 41 | Tue Aug 20 2024 |
| Modification of demux emp-paired golay-error-correction | | 8 | 301 | Wed Jul 17 2024 |
| quality-filter q-score on joined demux ignoring reverse reads | | 2 | 99 | Wed Apr 24 2024 |
| data demultiplexing error | | 12 | 379 | Thu Apr 04 2024 |
| qiime demux emp-paired Invalid value for '--i-seqs': Expected an artifact of at least type | | 4 | 206 | Fri Apr 05 2024 |
| Error in dumx.qza visualization (converting it into demux.qzv) | | 2 | 198 | Wed Mar 20 2024 |
| demux emp-paired killed after 2-3 days running | | 4 | 148 | Tue Feb 27 2024 |
| Problem processing Element AVITI 16S data (most discarded despite high phred scores) | | 22 | 1098 | Fri Feb 23 2024 |
| Demux and subsampling | | 7 | 286 | Sat Feb 24 2024 |
| Demux results in missing samples from 3 separate libraries | | 5 | 159 | Mon Feb 12 2024 |
