| Demux summarize broken after upgrading from 2025.7 to 2025.10 | | 7 | 59 | Wed Dec 17 2025 |
| Duplicate barcode error, but barcodes listed are not the same. | | 7 | 73 | Tue Aug 19 2025 |
| Is there a maximum threshold for demux summarize --p-n ? | | 3 | 52 | Wed Jun 11 2025 |
| DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages | | 2 | 38 | Thu May 22 2025 |
| Invalid value for 'emp-paired-end-sequences.qza' | | 4 | 32 | Thu Mar 06 2025 |
| Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom) | | 8 | 126 | Fri Feb 28 2025 |
| BadZipFile: how to find the corrupted file? | | 5 | 101 | Wed Feb 26 2025 |
| QIIME2 microbiome analysis and python version | | 2 | 70 | Sat Mar 29 2025 |
| Issue importing Paired end sequences with quality and interactive quality plot | | 2 | 23 | Mon Feb 17 2025 |
| Golay Barcodes not being detected with demux | | 5 | 65 | Tue Feb 04 2025 |
| Which position is best for trimming in a paired-end approach? | | 11 | 109 | Fri Jan 24 2025 |
| [demux summarize] Invalid value for '--i-data': [Errno 9] Bad file descriptor | | 9 | 62 | Fri Nov 08 2024 |
| demux for fastq files that don't have barcode in them? | | 4 | 36 | Wed Oct 30 2024 |
| Dada2 unable to run | | 2 | 47 | Tue Oct 29 2024 |
| Interpreting Interactive Quality Plot | | 2 | 101 | Mon Oct 14 2024 |
| Merging after denoising step | | 15 | 278 | Wed Sep 11 2024 |
| QIIME2 Demultiplexing Sequence | | 7 | 136 | Tue Sep 03 2024 |
| Plugin error from demux:Value must be a nonnegative integer or None | | 2 | 33 | Tue Aug 20 2024 |
| Modification of demux emp-paired golay-error-correction | | 8 | 284 | Wed Jul 17 2024 |
| quality-filter q-score on joined demux ignoring reverse reads | | 2 | 89 | Wed Apr 24 2024 |
| data demultiplexing error | | 12 | 353 | Thu Apr 04 2024 |
| qiime demux emp-paired Invalid value for '--i-seqs': Expected an artifact of at least type | | 4 | 185 | Fri Apr 05 2024 |
| Error in dumx.qza visualization (converting it into demux.qzv) | | 2 | 192 | Wed Mar 20 2024 |
| demux emp-paired killed after 2-3 days running | | 4 | 133 | Tue Feb 27 2024 |
| Problem processing Element AVITI 16S data (most discarded despite high phred scores) | | 22 | 1058 | Fri Feb 23 2024 |
| Demux and subsampling | | 7 | 262 | Sat Feb 24 2024 |
| Demux results in missing samples from 3 separate libraries | | 5 | 158 | Mon Feb 12 2024 |
| Abnormal high percentage of unclassified bacteria | | 2 | 339 | Thu Jan 11 2024 |
| Plugin error from demux--AttributeError: 'NoneType' object has no attribute 'strip' | | 6 | 325 | Thu Dec 28 2023 |
| Is there a multiple_split_libraries.py in QIIME2 | | 5 | 152 | Wed Dec 06 2023 |
