This QIIME 2 plugin supports demultiplexing of single-end and paired-end sequence reads and visualization of sequence quality information.
- version:
2024.10.0 - website: https://
github .com /qiime2 /q2 -demux - user support:
- Please post to the QIIME 2 forum for help with this plugin: https://
forum .qiime2 .org
Actions¶
| Name | Type | Short Description |
|---|---|---|
| emp-single | method | Demultiplex sequence data generated with the EMP protocol. |
| emp-paired | method | Demultiplex paired-end sequence data generated with the EMP protocol. |
| partition-samples-single | method | Split demultiplexed sequence data into partitions. |
| partition-samples-paired | method | Split demultiplexed sequence data into partitions. |
| tabulate-read-counts | method | Tabulate counts per sample |
| subsample-single | method | Subsample single-end sequences without replacement. |
| subsample-paired | method | Subsample paired-end sequences without replacement. |
| filter-samples | method | Filter samples out of demultiplexed data. |
| summarize | visualizer | Summarize counts per sample. |
- Links
- Documentation
- Source Code
- Stars
- 0
- Last Commit
- bdd4ad5
- Available Distros
- 2024.10
- 2024.10/amplicon
- 2024.10/metagenome
- 2024.10/pathogenome
- 2024.5
- 2024.5/amplicon
- 2024.5/metagenome
- 2024.2
- 2024.2/amplicon
- 2023.9
- 2023.9/amplicon
- 2023.7
- 2023.7/core