Quickstart install for:
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
CONDA_SUBDIR=osx-64 conda env create \
--name genome-sampler-amplicon-2024.10 \
--file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
conda activate genome-sampler-amplicon-2024.10
conda config --env --set subdir osx-64
Activate your environment (amplicon) and run:
conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
CONDA_SUBDIR=osx-64 conda env create \
--name genome-sampler-amplicon-2024.10 \
--file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
conda activate genome-sampler-amplicon-2024.10
conda config --env --set subdir osx-64
Activate your environment (amplicon) and run:
conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
CONDA_SUBDIR=osx-64 conda env create \
--name genome-sampler-amplicon-2024.10 \
--file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
conda activate genome-sampler-amplicon-2024.10
conda config --env --set subdir osx-64
Activate your environment (amplicon) and run:
conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
[Fresh Install]
[Fresh Install (Apple Silicon)]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
CONDA_SUBDIR=osx-64 conda env create \
--name genome-sampler-amplicon-2024.10 \
--file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
conda activate genome-sampler-amplicon-2024.10
conda config --env --set subdir osx-64
Activate your environment (amplicon) and run:
conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
Showing the last 30 topics from:
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Using genome-sampler for my own dataset | 3 | 24 | Mon Feb 17 2025 | |
Installing genome sampler on MacOS running Seqouia | 10 | 101 | Mon Feb 17 2025 |
- Links
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- 2021e22
- Available Distros
- 2024.10
- 2024.10/amplicon