Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt

Tools for sampling from collections of genomes.

version: 2025.02.0+2.g48f92d9
website: https://genome-sampler.readthedocs.io
user support:
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
citations:
Bolyen et al., 2020

Actions

NameTypeShort Description
sample-randommethodSample IDs at random.
sample-longitudinalmethodSample dates uniformly across time
sample-neighborsmethodSample context sequences that are near-neighbors of focal sequences.
sample-diversitymethodIdentify a divergent collection of context sequences.
filter-seqsmethodFilter sequences.
combine-selectionsmethodCombine id selections.
maskmethodMask alignment
label-seqsmethodRe-label aligned sequences
summarize-selectionsvisualizerSummarize one or more selections.

Artifact Classes

FeatureData[Selection]
AlignmentMask

Formats

IDSelectionDirFmt
GISAIDDNAFASTAFormat
VCFMaskFormat
VCFMaskDirFmt