genome-sampler

caporaso-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name genome-sampler-amplicon-2024.10 \
  --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
conda activate genome-sampler-amplicon-2024.10
conda config --env --set subdir osx-64

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

genome-sampler: step-by-step tutorial

https://genome-sampler.readthedocs.io/en/latest/tutorial.html

(No description available.)

genome-sampler: Snakemake tutorial

https://genome-sampler.readthedocs.io/en/latest/tutorial-snakemake.html

(No description available.)

Links

Documentation

Source Code

Stars

Last Commit

2021e22

Available Distros

2024.10: 2024.10/amplicon