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genome-sampler

caporaso-lab

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Quickstart install for:
[Fresh Install]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

Activate your environment (amplicon-2024.10) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
[Fresh Install]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

Activate your environment (amplicon-2024.10) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
[Fresh Install]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

Activate your environment (amplicon-2024.10) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml
[Fresh Install]
[Update Existing]
conda env create --name genome-sampler-amplicon-2024.10 --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

Activate your environment (amplicon-2024.10) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/genome-sampler/refs/heads/dev/environment-files/genome-sampler-qiime2-amplicon-2024.10.yml

genome-sampler: step-by-step tutorial

https://genome-sampler.readthedocs.io/en/latest/tutorial.html

(No description available.)

genome-sampler: Snakemake tutorial

https://genome-sampler.readthedocs.io/en/latest/tutorial-snakemake.html

(No description available.)

Links
Documentation Documentation
GitHub Source Code
Stars
6
Last Commit
2021e22 Passed
Available Distros
2024.10
2024.10/amplicon