q2-boots

caporaso-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-boots-amplicon-2025.7 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-amplicon-2025.7 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml
conda activate q2-boots-amplicon-2025.7
conda config --env --set subdir osx-64

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml

Showing the last 30 topics from:

https://forum.qiime2.org/tag/q2-boots

Topic	Replies	Views	Activity
QoL Improvement: q2-boots and q2-diversity core-metrics should error at the start of run when samples missing from mapping file	2	13	Mon Dec 08 2025
q2-boots and multiple metrics	2	33	Thu Nov 20 2025
Rarefaction vs Rarefying and when to use them in your analysis pipeline	16	696	Thu Oct 16 2025
q2-boots and new QIIME 2 Library installation questions	12	242	Fri May 09 2025
q2-boots: bootstrapped and rarefaction-based diversity analysis 🥾	4	314	Tue Apr 15 2025
q2-boots and Parsl testing	5	108	Thu Sep 12 2024

Links

Documentation

Source Code

Stars

Last Commit

0d05754

Available Distros

2025.7: 2025.7/amplicon
2025.4: 2025.4/amplicon
2024.10: 2024.10/amplicon
2024.5: 2024.5/amplicon