q2-boots

caporaso-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-boots-qiime2-2025.7 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-qiime2-2025.7 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml
conda activate q2-boots-qiime2-2025.7
conda config --env --set subdir osx-64

Activate your environment (qiime2) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml

Showing the last 30 topics from:

https://forum.qiime2.org/tag/q2-boots

Topic	Replies	Views	Activity
q2 boots beta - reuse rarefaction tables	2	56	Tue Jul 14 2026
q2-boots, q2-gemelli, rarefaction, and sampling depths	8	151	Mon Jun 22 2026
Rarefaction vs Rarefying and when to use them in your analysis pipeline	14	1737	Fri May 22 2026
QoL Improvement: q2-boots and q2-diversity core-metrics should error at the start of run when samples missing from mapping file	3	60	Fri Dec 12 2025
q2-boots and multiple metrics	2	64	Thu Nov 20 2025
q2-boots and new QIIME 2 Library installation questions	11	309	Fri May 09 2025
q2-boots and Parsl testing	5	138	Thu Sep 12 2024
q2-boots: bootstrapped and rarefaction-based diversity analysis 🥾	0	411	Tue Apr 15 2025

Links

Documentation

Source Code

Stars

Last Commit

365f5de

Available Distros

2025.7: 2025.7/qiime2
2025.4: 2025.4/qiime2
2024.10: 2024.10/qiime2
2024.5: 2024.5/qiime2