q2-boots

caporaso-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-boots-amplicon-2025.7 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-amplicon-2025.7 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml
conda activate q2-boots-amplicon-2025.7
conda config --env --set subdir osx-64

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.7-release-2025.7.beta.yml

Gut-to-soil axis tutorial 💩🌱

https://q2-boots.readthedocs.io/en/latest/tutorial.html

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Links

Documentation

Source Code

Stars

Last Commit

946b12e

Available Distros

2025.7: 2025.7/amplicon
2025.4: 2025.4/amplicon
2024.10: 2024.10/amplicon
2024.5: 2024.5/amplicon